PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.147580.1
Common NameCsa_7G048070, LOC105436232
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 205aa    MW: 23070.9 Da    PI: 8.2018
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.147580.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.6e-091462655
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                     ++E++RR+++++  ++L++l+P+ +   +   l   +    A++YIk+L+
  Cucsa.147580.1 14 RIIEKNRRNQMKNLCDQLKSLVPQqD--SKEVSLALPDQIDVAIKYIKDLE 62
                    68**********************44..3444577779**********996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.611861IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.14E-51065No hitNo description
SuperFamilySSF474596.67E-111080IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-101381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-61462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
FSASSSTAAK IERRIIEKNR RNQMKNLCDQ LKSLVPQQDS KEVSLALPDQ IDVAIKYIKD  60
LEKRVNSAKE KKNRLQGKNK SAINMDSSSS SSSSSSSPQL KINQMGKSLE IILSSGNDNQ  120
YLLCETLRIL EEEGTEVVSA SFSVSGNSVF HTIHAQLGDS MVEFGMTKAT ERLTRLVYRS  180
NSDVELQKEE KQWWKEFPSE NWEF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817921e-109LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132551e-109LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659708.11e-148PREDICTED: transcription factor bHLH125-like
TrEMBLA0A0A0K2C91e-148A0A0A0K2C9_CUCSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-20bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]